VCU Center for the Study of Biological Complexity
The Genome Functional Genomics Vaccine Development

Links

1. Cryptosporidium parvum Resources:

C. parvum Genomic DNA Sequence Demonstration Project at University of Minnesota

The Cryptosporidium Genome Resources

EST project web site

US Version of EST project web site (updated more often)

C. parvum
HAPPY mapping project web site

General Cryptosporidium Web Page

CDC Cryptosporidiosis Information page

2. Useful Bioinformatics Tools and Database:

Guide to web-based analysis tools

KEGG - Kyoto Encyclopedia of Genes and Genomes

CryptoDB

PlasmoDB

ToxoDB

GeneDB

TigrDB

Genbank

Refseq

Expasy Swissprot

EMBL Swissprot

PIR

PDB

PIR-NRL3D

PROSITE

Pfam


3. Guide to Parasite Genome Information:

Parasite Genome Internet Resources and Contacts

4. C. hominis references :

Cryptosporidium-related literature

5. Genome Centers:

University of Oklahoma's Advanced Center for Genome Technology

Stanford Human Genome Center

Stanford Genome Technology Center

Whitehead Institute for Biomedical Research/MIT Center for Genome Research

Baylor College of Medicine Human Genome Sequencing Center

The Institute for Genomic Research

Oak Ridge National Laboratory Section of Computational Biology

The Sanger Centre

DOE Joint Genome Institute

The University of Washington Genome Center

Washington University in St. Louis Genome Sequencing Center

MCV-VCU Massey Cancer Center Nucleic Acids Research Facility

National Center for Biotechnology Information

6. Functional Genomics

Ramhorn Array Database

Gene Expression Links

Gene Expression and Microarrays

Microarrays.org – software and protocols collected by the DeRisi lab in UCSF

Short introduction to microarrays

PDF file by Petter Mostad, summarized and some nice figures


Longer introduction to microarray technologies


ArrayOligoSelector software
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